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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002045m | ||||||||
Common Name | EUTSA_v10002045mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C3H | ||||||||
Protein Properties | Length: 317aa MW: 35653.9 Da PI: 7.686 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.7e-09 | 129 | 149 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r G C++Gd+C FaHg Thhalv10002045m 129 ACPEFRR-GSCRRGDSCEFAHG 149 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.165 | 76 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.89E-5 | 123 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-6 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-7 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 159 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061157 | Biological Process | mRNA destabilization | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003727 | Molecular Function | single-stranded RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MMIGENSRPH PTIHIPPWDP INDPTATISS PFSSVNFHDY PHSLDSFASL YRYLPSNEFA 60 NDSDSSSGDE SLSLSFADSF ACDEFRMYEF KVRRCSRGRS HDWTECPFAH PGEKARRRDP 120 TKYHYSGTAC PEFRRGSCRR GDSCEFAHGV FECWLHPARY RTQPCKDGTS CRRRICFFAH 180 TPEQLRFLAN SAEPDLGLSS IRNHFSKSAT ATSPTSILIS PPFSPQSESP PLSPSTGELI 240 ASMRKMQLNG GCSLSSPLGL PHRSSLTQGR TWPRIREFEI WDNACEEEVP AMKLVESGKE 300 LRARMYARLS RENSLG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408830.1 | 0.0 | hypothetical protein EUTSA_v10002045mg | ||||
Swissprot | O82307 | 1e-150 | C3H23_ARATH; Zinc finger CCCH domain-containing protein 23 | ||||
TrEMBL | V4MCR3 | 0.0 | V4MCR3_EUTSA; Uncharacterized protein | ||||
STRING | AT2G25900.1 | 1e-148 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 1e-150 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002045m |
Entrez Gene | 18025651 |